| Overview | Grid | Race Entries |
| Race | Qualifying |
| Race Name: | XXV Fuji Television Japanese Grand Prix |
| Track: | Suzuka International Racing Course |
| Round: | 16 of 16 |
| Race date: | Sunday, October 31st, 1999 |
| Race time: | 14.00 |
| 1st | 2nd | 3rd | |
| Driver | Mika Häkkinen | Michael Schumacher | Eddie Irvine |
| Constructor | McLaren-Mercedes | Ferrari | Ferrari |
| Car | McLaren MP4/14 | Ferrari F399 | Ferrari F399 |
| Engine | Mercedes FO 110H | Ferrari 048 | Ferrari 048 |
| Tyre | Bridgestone | Bridgestone | Bridgestone |
| Time | 1:31:18.785 | 1:31:23.800 | 1:32:54.473 |
| Gap | 5.015 secs | 1m 35.688 secs |
| P | No. | Driver | Qual | Race | Total | |
| 1 | 3 | Michael Schumacher Ferrari | 1:37.470 0 | 1:41.319 53 | 1:37.470 53 | |
| 2 | 1 | Mika Häkkinen McLaren-Mercedes | 1:37.820 0 | 1:41.577 53 | 1:37.820 53 | |
| 3 | 2 | David Coulthard McLaren-Mercedes | 1:38.239 0 | 1:42.106 39 | 1:38.239 39 | |
| 4 | 8 | Heinz-Harald Frentzen Jordan-Mugen Honda | 1:38.696 0 | 1:42.972 53 | 1:38.696 53 | |
| 5 | 4 | Eddie Irvine Ferrari | 1:38.975 0 | 1:43.297 53 | 1:38.975 53 | |
| 6 | 18 | Olivier Panis Prost-Peugeot | 1:39.623 0 | 1:43.188 19 | 1:39.623 19 | |
| 7 | 19 | Jarno Trulli Prost-Peugeot | 1:39.644 0 | 1:44.304 3 | 1:39.644 3 | |
| 8 | 17 | Johnny Herbert Stewart-Ford Cosworth | 1:39.706 0 | 1:43.706 52 | 1:39.706 52 | |
| 9 | 6 | Ralf Schumacher Williams-Supertec | 1:39.717 0 | 1:42.567 53 | 1:39.717 53 | |
| 10 | 11 | Jean Alesi Sauber-Petronas | 1:39.721 0 | 1:43.669 52 | 1:39.721 52 | |
| 11 | 22 | Jacques Villeneuve BAR-Supertec | 1:39.732 0 | 1:43.898 52 | 1:39.732 52 | |
| 12 | 7 | Damon Hill Jordan-Mugen Honda | 1:40.140 0 | 1:43.939 21 | 1:40.140 21 | |
| 13 | 16 | Rubens Barrichello Stewart-Ford Cosworth | 1:40.140 0 | 1:43.496 52 | 1:40.140 52 | |
| 14 | 9 | Giancarlo Fisichella Benetton-Playlife | 1:40.261 0 | 1:44.379 47 | 1:40.261 47 | |
| 15 | 10 | Alex Wurz Benetton-Playlife | 1:40.303 0 | 1:43.963 52 | 1:40.303 52 | |
| 16 | 5 | Alex Zanardi Williams-Supertec | 1:40.403 0 | No Time 0 | 1:40.403 0 | |
| 17 | 12 | Pedro Diniz Sauber-Petronas | 1:40.740 0 | 1:44.112 52 | 1:40.740 52 | |
| 18 | 23 | Ricardo Zonta BAR-Supertec | 1:40.861 0 | 1:44.869 52 | 1:40.861 52 | |
| 19 | 15 | Tora Takagi Arrows | 1:41.067 0 | 1:46.150 43 | 1:41.067 43 | |
| 20 | 21 | Marc Gené Minardi-Ford Cosworth | 1:41.529 0 | 1:45.359 31 | 1:41.529 31 | |
| 21 | 14 | Pedro de la Rosa Arrows | 1:41.708 0 | 1:45.556 51 | 1:41.708 51 | |
| 22 | 20 | Luca Badoer Minardi-Ford Cosworth | 1:42.515 0 | 1:45.377 43 | 1:42.515 43 |